(************** Content-type: application/mathematica ************** CreatedBy='Mathematica 5.0' Mathematica-Compatible Notebook This notebook can be used with any Mathematica-compatible application, such as Mathematica, MathReader or Publicon. The data for the notebook starts with the line containing stars above. To get the notebook into a Mathematica-compatible application, do one of the following: * Save the data starting with the line of stars above into a file with a name ending in .nb, then open the file inside the application; * Copy the data starting with the line of stars above to the clipboard, then use the Paste menu command inside the application. Data for notebooks contains only printable 7-bit ASCII and can be sent directly in email or through ftp in text mode. Newlines can be CR, LF or CRLF (Unix, Macintosh or MS-DOS style). 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For more information on notebooks and Mathematica-compatible applications, contact Wolfram Research: web: http://www.wolfram.com email: info@wolfram.com phone: +1-217-398-0700 (U.S.) Notebook reader applications are available free of charge from Wolfram Research. *******************************************************************) (*CacheID: 232*) (*NotebookFileLineBreakTest NotebookFileLineBreakTest*) (*NotebookOptionsPosition[ 322420, 10370]*) (*NotebookOutlinePosition[ 323217, 10398]*) (* CellTagsIndexPosition[ 323173, 10394]*) (*WindowFrame->Normal*) Notebook[{ Cell["MAP-Kinase in Solution - basic", "Title"], Cell[CellGroupData[{ Cell["Load Cellerator", "Subtitle"], Cell[CellGroupData[{ Cell[BoxData[{ \(\(<< Cellerator.m;\)\), "\[IndentingNewLine]", \(complexLeft = "\<\>"; complexRight = "\<\>";\), "\[IndentingNewLine]", \(\(dash = "\<\>";\)\)}], "Input"], Cell[BoxData[ \("Cellerator\[Trademark] 1.4.3 (6-March-2004) loaded 6-Mar-2004 12:11 \ using Mathematica Version 5.0 for Mac OS 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RowSpacings->0.25, ColumnSpacings->1, RowAlignments->Baseline, ColumnAlignments->{Left}], "\<\"a9*MAPKp[t]*MEKpp[t]\"\>"}, {"\<\"Reaction26\"\>", "\<\"MAPKpMEKpp \[Rule] MAPKp + MEKpp\"\>", GridBox[{ {"\<\"d9\[Rule]0.6\"\>"} }, RowSpacings->0.25, ColumnSpacings->1, RowAlignments->Baseline, ColumnAlignments->{Left}], "\<\"d9*MAPKpMEKpp[t]\"\>"}, {"\<\"Reaction27\"\>", "\<\"MAPKpMEKpp \[Rule] MAPKpp + MEKpp\"\>", GridBox[{ {"\<\"k9\[Rule]0.1\"\>"} }, RowSpacings->0.25, ColumnSpacings->1, RowAlignments->Baseline, ColumnAlignments->{Left}], "\<\"k9*MAPKpMEKpp[t]\"\>"}, {"\<\"Reaction28\"\>", "\<\"MAPKPH + MAPKpp \[Rule] MAPKppMAPKPH\"\ \>", GridBox[{ {"\<\"a10\[Rule]5.\"\>"} }, RowSpacings->0.25, ColumnSpacings->1, RowAlignments->Baseline, ColumnAlignments->{Left}], "\<\"a10*MAPKPH[t]*MAPKpp[t]\"\>"}, {"\<\"Reaction29\"\>", "\<\"MAPKppMAPKPH \[Rule] MAPKPH + MAPKpp\"\ \>", GridBox[{ {"\<\"d10\[Rule]0.4\"\>"} }, RowSpacings->0.25, ColumnSpacings->1, RowAlignments->Baseline, ColumnAlignments->{Left}], "\<\"d10*MAPKppMAPKPH[t]\"\>"}, {"\<\"Reaction30\"\>", "\<\"MAPKppMAPKPH \[Rule] MAPKp + \ MAPKPH\"\>", GridBox[{ {"\<\"k10\[Rule]0.1\"\>"} }, RowSpacings->0.25, ColumnSpacings->1, RowAlignments->Baseline, ColumnAlignments->{Left}], "\<\"k10*MAPKppMAPKPH[t]\"\>"} }, RowSpacings->1, ColumnSpacings->3, RowAlignments->Top, ColumnAlignments->{Left}], TableForm[ {{ StyleForm[ "Name", FontWeight -> "Bold", FontVariations -> {"Underline" -> True}, FontFamily -> "Times", FontColor -> RGBColor[ 0.41569299999999998, 0.35290100000000002, 0.80390300000000003], FontSize -> 14], StyleForm[ "Reaction", FontWeight -> "Bold", FontVariations -> {"Underline" -> True}, FontFamily -> "Times", FontColor -> RGBColor[ 0.41569299999999998, 0.35290100000000002, 0.80390300000000003], FontSize -> 14], StyleForm[ "Parameters", FontWeight -> "Bold", FontVariations -> {"Underline" -> True}, FontFamily -> "Times", FontColor -> RGBColor[ 0.41569299999999998, 0.35290100000000002, 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"k3*MEKRAFp[t]"}, { "Reaction10", "MEKp + MEKPH \[Rule] MEKpMEKPH", {"a4\[Rule]10."}, "a4*MEKp[t]*MEKPH[t]"}, {"Reaction11", "MEKpMEKPH \[Rule] MEKp + MEKPH", {"d4\[Rule]0.8"}, "d4*MEKpMEKPH[t]"}, {"Reaction12", "MEKpMEKPH \[Rule] MEK + MEKPH", { "k4\[Rule]0.1"}, "k4*MEKpMEKPH[t]"}, {"Reaction13", "MEKp + RAFp \[Rule] MEKpRAFp", {"a5\[Rule]3.3"}, "a5*MEKp[t]*RAFp[t]"}, {"Reaction14", "MEKpRAFp \[Rule] MEKp + RAFp", {"d5\[Rule]0.4"}, "d5*MEKpRAFp[t]"}, {"Reaction15", "MEKpRAFp \[Rule] MEKpp + RAFp", { "k5\[Rule]0.1"}, "k5*MEKpRAFp[t]"}, {"Reaction16", "MEKPH + MEKpp \[Rule] MEKppMEKPH", {"a6\[Rule]10."}, "a6*MEKPH[t]*MEKpp[t]"}, {"Reaction17", "MEKppMEKPH \[Rule] MEKPH + MEKpp", {"d6\[Rule]0.8"}, "d6*MEKppMEKPH[t]"}, {"Reaction18", "MEKppMEKPH \[Rule] MEKp + MEKPH", {"k6\[Rule]0.1"}, "k6*MEKppMEKPH[t]"}, {"Reaction19", "MAPK + MEKpp \[Rule] MAPKMEKpp", {"a7\[Rule]20."}, "a7*MAPK[t]*MEKpp[t]"}, {"Reaction20", "MAPKMEKpp \[Rule] MAPK + MEKpp", {"d7\[Rule]0.6"}, "d7*MAPKMEKpp[t]"}, {"Reaction21", "MAPKMEKpp \[Rule] MAPKp + MEKpp", {"k7\[Rule]0.1"}, "k7*MAPKMEKpp[t]"}, {"Reaction22", "MAPKp + MAPKPH \[Rule] MAPKpMAPKPH", {"a8\[Rule]5."}, "a8*MAPKp[t]*MAPKPH[t]"}, {"Reaction23", "MAPKpMAPKPH \[Rule] MAPKp + MAPKPH", {"d8\[Rule]0.4"}, "d8*MAPKpMAPKPH[t]"}, {"Reaction24", "MAPKpMAPKPH \[Rule] MAPK + MAPKPH", {"k8\[Rule]0.1"}, "k8*MAPKpMAPKPH[t]"}, {"Reaction25", "MAPKp + MEKpp \[Rule] MAPKpMEKpp", {"a9\[Rule]20."}, "a9*MAPKp[t]*MEKpp[t]"}, {"Reaction26", "MAPKpMEKpp \[Rule] MAPKp + MEKpp", {"d9\[Rule]0.6"}, "d9*MAPKpMEKpp[t]"}, {"Reaction27", "MAPKpMEKpp \[Rule] MAPKpp + MEKpp", {"k9\[Rule]0.1"}, "k9*MAPKpMEKpp[t]"}, {"Reaction28", "MAPKPH + MAPKpp \[Rule] MAPKppMAPKPH", {"a10\[Rule]5."}, "a10*MAPKPH[t]*MAPKpp[t]"}, {"Reaction29", "MAPKppMAPKPH \[Rule] MAPKPH + MAPKpp", {"d10\[Rule]0.4"}, "d10*MAPKppMAPKPH[t]"}, {"Reaction30", "MAPKppMAPKPH \[Rule] MAPKp + MAPKPH", {"k10\[Rule]0.1"}, "k10*MAPKppMAPKPH[t]"}}, TableAlignments -> {Left, Top}]]], "Output", 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